BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB011D11LP1|AL426214
(601 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig141 489 e-138
3x_Contig1376 276 4e-74
3x_Contig1591 111 2e-24
>3x_Contig141
Length = 808
Score = 489 bits (243), Expect = e-138
Identities = 253/257 (98%), Gaps = 1/257 (0%)
Strand = Plus / Minus
Query: 1 tagycatcatgtcatttccatggtcttattcggtgttgggtttaattccgggacttatat 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tagccatcatgtcatttccatggtcttattcggtgttgggtttaattccgggacttatat 197
Query: 61 tgabtgcwtttgttgcaattaccgtcttgtacacaggacttattgttttggattattgtg 120
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgactgcatttgttgcaattaccgtcttgtacacaggacttattgttttggattattgtg 137
Query: 121 aacggttccctcatcttaaaaatgtgtgtgacattggacaacatctattctggggcagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aacggttccctcatcttaaaaatgtgtgtgacattggacaacatctattctggggcagca 77
Query: 181 aggctgccatggtatgcaactgctgtttgcttcatagctaacaacacacttatccaaggg 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 aggctgcc-tggtatgcaactgctgtttgcttcatagctaacaacacacttatccaaggg 18
Query: 241 ttgcacgtcttggtcgg 257
|||||||||||||||||
Sbjct: 17 ttgcacgtcttggtcgg 1
>3x_Contig1376
Length = 7449
Score = 276 bits (137), Expect = 4e-74
Identities = 146/153 (95%)
Strand = Plus / Minus
Query: 449 camccagctggctatgatggtactgctgtawcgtatcaattatggcctawgawgggaaca 508
|| ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct: 7449 cacccagctggctatgatggtactgctgtaacgtatcaattatggcctaagaagggaaca 7390
Query: 509 acatatgttgatgccatgggtgcatttttgawtattttctacacttttgttggtcaaatt 568
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 7389 acatatgttgatgccatgggtgcatttttgaatattgtctacacttttgttggtcaaatt 7330
Query: 569 acttatccacagtwcatctctgagatgaaaaga 601
||||||||||||| |||||||||||||||||||
Sbjct: 7329 acttatccacagttcatctctgagatgaaaaga 7297
>3x_Contig1591
Length = 14045
Score = 111 bits (55), Expect = 2e-24
Identities = 123/147 (83%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 326 tcatttcatttgtgttttcaatcccaagaacattctcctccttatctaarggkgcatact 385
||||||| ||||||||||| ||||||||||| ||| |||| | ||||| | |||||||
Sbjct: 4591 tcatttcttttgtgttttctatcccaagaaccttcgcctctatgtctaaagttgcatact 4532
Query: 386 tctcagctattaccatgttcatttcagttatcttggctattgatytttgctggaattcag 445
||||||||||||||||||||||||| || || |||||| | || |||| ||||| |||
Sbjct: 4531 tctcagctattaccatgttcatttcggtaatactggcta-tcatctttgtaggaatccag 4473
Query: 446 gatcamccagctggctatgatggtact 472
||||| || | ||| ||||||||||||
Sbjct: 4472 gatcacccggttggttatgatggtact 4446
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.32
Gapped
Lambda K H
1.40 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3106
Number of Sequences: 1807
Number of extensions: 3106
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 3
length of query: 601
length of database: 10,358,551
effective HSP length: 16
effective length of query: 585
effective length of database: 10,329,639
effective search space: 6042838815
effective search space used: 6042838815
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 49 (99.1 bits)